PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G132600.1
Common NamePHAVU_006G132600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 667aa    MW: 77221.5 Da    PI: 7.6849
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G132600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.2e-2060143189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Y  YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     + r+etrtgC a++++++ ++++w+v ++ leHnH l
  Phvul.006G132600.1  60 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 143
                         5899***************************************9988.....999********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1860143IPR004330FAR1 DNA binding domain
PfamPF105511.3E-30261354IPR018289MULE transposase domain
PfamPF044344.9E-5535580IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.52548584IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEETSLCCEQ LADGECIEVQ KDEDGALIVL DCQNGFPEGR KEFVAPAVGM EFESYDDAYN  60
YYICYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNHLRK ETRTGCPAMI  120
RMRLVESQRW RVLEVMLEHN HMLGAKHRLV KKMGTGMKRK SLPSSDAEGQ TIKLYRALVI  180
DAGGDGISNS SAREERSFCE FSNKLNLRKG DTQAIYNFLC RMQLTNPNFF YLMDFNDEGH  240
LRNAFWVDAR SRAACGYFGD VIYFDNTYLS NKFEIQLVTF VGINHHGHSV LLGCGLLASE  300
TTESYVWLFR TWVKCMSGCS PQTIITDRCK ALQRAIVEVF PRCRHCFGLS LIMKKLPEKL  360
GGLHNYDALR KALIKAVYET LKVIEFEAAW GFMIQHFGVS DHEWLRSLYE DRVHWAPVFL  420
KDTFFAGMSA ARPGENMTPF FDRYVHKQTP LKEFLDKYEL ALHKKHKEES FADIESRSSS  480
PLLKTRCSFE LQLSRLYTRE MFMKFQLEVE EVYSCFGTTQ LHVDGPIIIF LVKERVLIEG  540
NRREIRDFEV LYSRTVGEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPH RYILSRWKKD  600
YKRLYVPDHS SGTADDTDRI QWSNQLFRSA LQVVEEGILS LDHYNVALQS LEDSLSKVHD  660
VEQRHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147533.10.0hypothetical protein PHAVU_006G132600g
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLV7BNJ00.0V7BNJ0_PHAVU; Uncharacterized protein
STRINGGLYMA15G13150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6